anndata.settings.override

anndata.settings.override#

settings.override(**overrides)[source]#

Provides local override via keyword arguments as a context manager.

Yields:

None –

remove_unused_categories: bool: Whether or not to remove unused categories with Categorical. (default: True).
check_uniqueness: bool: Whether or not to check uniqueness of the obs indices on __init__ of AnnData. (default: True).
allow_write_nullable_strings: bool: Whether or not to allow writing of pd.arrays.StringArray. (default: False).
zarr_write_format: int: Which version of zarr to write to when anndata must internally open a write-able zarr group. (default: 2).
use_sparse_array_on_read: bool: Whether or not to use scipy.sparse.sparray as the default class when reading in data (default: False).
min_rows_for_chunked_h5_copy: int: Minimum number of rows at a time to copy when writing out an H5 Dataset to a new location (default: 1000).
disallow_forward_slash_in_h5ad: bool: Whether or not to disallow the / character in keys for h5ad files (default: False).