anndata.AnnData.to_df

Contents

anndata.AnnData.to_df#

AnnData.to_df(layer=None)[source]#

Generate shallow DataFrame.

The data matrix X is returned as DataFrame, where obs_names initializes the index, and var_names the columns.

No annotations are maintained in the returned object.
The data matrix is densified in case it is sparse.

Parameters:

layer str | None (default: None): Key for .layers.

Return type:

Returns:

Pandas DataFrame of specified data matrix.