anndata.AnnData.to_df

AnnData.to_df(layer=None)

Generate shallow DataFrame.

The data matrix X is returned as DataFrame, where obs_names initializes the index, and var_names the columns.

  • No annotations are maintained in the returned object.

  • The data matrix is densified in case it is sparse.

Parameters
layer : str

Key for .layers.

Return type

DataFrameDataFrame